Software
MAN-A1
- full name:
- version:
- descriptions: A program for complex segregation analysis in humans
- Authors:
- web/ftp: http://mga.bionet.nsc.ru/soft/MAN/MAN.zip
- source code language: FORTRAN
- operating systems: Windows
- reference:
MAIA-1.0
MGA-MAPF2
MGA-SIMULATE
- full name:
- version:
- descriptions: A program package for simulating genotypes and phenotypes given a pedigree structure, genetic map and a model of inheritance. For a pedigree founders, it is possible to come from 2 different populations (breeds). MGA-SIMULATE-00.06 - a newer version of MGA-SIMULATE
- Authors:
- web/ftp: http://mga.bionet.nsc.ru/soft/simulate/, ftp://mga.bionet.nsc.ru/mga-simulate/
- source code language: C, C++, FORTRAN
- operating systems: Linux
- reference:
MGA-UTIL
cvcrF2
- full name:
- version:
- descriptions: A set of programs from MGA and other people arranged in the form of package for combined variance components/regression QTL analysis in F-2 progeny coming freom crosses between outbred lines
- Authors: Yurii Aulchenko
- web/ftp: http://mga.bionet.nsc.ru/soft/cvcrf2/cvcrF2-0.9b.tar.gz
- source code language: FORTRAN
- operating systems: Linux
- reference:
METHGI
Loki_QTLc_1.02
- full name:
- version:
- descriptions: A set of programs for MCMC calculations of QTL-coefficients. Majority of source code is Loki 2.3 by S. Heath, which should be downloaded from our FTP or elsewhere.
- Authors: Yurii Aulchenko
- web/ftp: ftp://mga.bionet.nsc.ru/tgz-ed/
- source code language: C, FORTRAN
- operating systems: Linux
- reference:
manfreq-1.0
- full name:
- version:
- descriptions: A program for estimation of allelic frequencies in ancestral populations.
- Authors:
- web/ftp: ftp://mga.bionet.nsc.ru/manfreq-1.0/
- source code language: Windows
- operating systems:
- reference:
MitPene
PedigreeQuery
LOOP_EDGE
LOOP_PED
- full name:
- version:
- descriptions: A program for cutting and extension of pedigrees with multiple loops. Algorithm based on the step by step breaking loops was used in the package.
- Authors: Tatiana Axenovich
- web/ftp: http://mga.bionet.nsc.ru/soft/LOOP/LOOP_PED.tar.gz
- source code language: FORTRAN
- operating systems: Windows, Linux
- reference:
LOOP_STAR
affy2mega
recode_ped
pool_str
fcn
- full name:
- version:
- descriptions: A program for describing complex pedigree structures.
- Authors: F. Liu, S. Elefante, C.M.van Duijn, Y.S.Aulchenko
- web/ftp: ftp://mga.bionet.nsc.ru/fcn/
- source code language: Perl
- operating systems:
- reference:
gen_qc
recode_gen
- full name:
- version:
- descriptions: A program for recoding alphabeticly coded systems into numerical alleles for PedCheck.
- Authors: Irina Zorkoltseva
- web/ftp: ftp://mga.bionet.nsc.ru/gencheck/recodesnp.tar.gz
- source code language: Perl
- operating systems:
- reference:
desc_sta
task_manager
PedCut
- full name: PedCut 1.19
- version: 1.19
- descriptions: A program for cutting complex pedigree into computable sub-pedigrees with user-specified MaxBit size
- Authors: F. Liu
- web/ftp: ftp://mga.bionet.nsc.ru/pedcut/ or http://mga.bionet.nsc.ru/soft/pedcut/pedcut_1.19.tar.gz
- source code language: Perl; the program uses PEDIG (Fortran-77) and PedHunter (C) software
- operating systems: Linux, Cygwin
- reference: F. Liu et al., in preparation
GenABEL
- full name: GenABEL
- version: 1.1.2
- descriptions: R library for genome-wide association analysis
- Authors: Y. Aulchenko
- web/ftp: GenABEL home page
- source code language: R, C
- operating systems: Linux, Windows
- reference: Aulchenko Y., Ripke S., Isaacs A., van Duijn C. (submitted) GenABEL: a R library for genome-wide association analysis
PedPeel
- full name: PedPeel
- version: 0.0.4
- descriptions: A program for preparing pedigree data for calculation of Elston-Stewarts' likelihood function. It finds an optimal way to peel
- Authors: Nadezhda Belonogova
- web/ftp: PedPeel home page
- source code language: Perl
- operating systems: Linux, Windows
MQscore
- full name: MQscore
- version:
- descriptions: A program for parametric linkage analysis of quantitative traits on the base of large pedigrees without loops.
- Authors: Tatiana Axenovich
- web/ftp: MQscore home page ftp://mga.bionet.nsc.ru/mqscore/
- source code language: FORTRAN, Perl
- operating systems: Linux, Windows
MQscore_SNP
- full name: MQscore_SNP
- version:
- descriptions: A program for multipoint parametric linkage analysis of quantitative traits and SNP markers on the base of large pedigrees without loops.
- Authors: Tatiana Axenovich
- web/ftp: MQscore_SNP home page
- source code language: FORTRAN, Perl
- operating systems: Linux, Windows
PedStr
miLD and booLD
MAN_H_PG
- full name:
- version: 3.0
- descriptions: Software for complex segregation analysis of quantitative traits on large pedigrees without loops
- Authors: Tatiana Axenovich
- web/ftp: http://mga.bionet.nsc.ru/soft/MAN_H_PG/MAN_H_PG.tar.gz
- source code language: Perl, FORTRAN
- operating systems: Linux, Windows
Ped_Outlier
GADS
- full name:
- version: 1.1
- descriptions: Software for Genetic Analyses of quantitative traits Distributed with Spike on the base of large pedigrees without loops
- Authors: Tatiana Axenovich
- web/ftp: http://mga.bionet.nsc.ru/soft/GADS/GADS-1.1.tar.gz
- source code language: Perl, FORTRAN
- operating systems: Linux, Windows
Last modified: 9 September 2011