@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Web-based version check ( --noweb to skip )
Connecting to web...  OK, v1.07 is current

Writing this text to log file [ plink.log ]
Analysis started: Wed May  9 16:35:09 2012

Options in effect:
	--bfile ../data/plink
	--recode
	--transpose
	--out plink

Reading map (extended format) from [ ../data/plink.bim ] 
500 markers to be included from [ ../data/plink.bim ]
Reading pedigree information from [ ../data/plink.fam ] 
120 individuals read from [ ../data/plink.fam ] 
0 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
0 cases, 0 controls and 120 missing
0 males, 120 females, and 0 of unspecified sex
Reading genotype bitfile from [ ../data/plink.bed ] 
Detected that binary PED file is v1.00 SNP-major mode
Before frequency and genotyping pruning, there are 500 SNPs
120 founders and 0 non-founders found
Total genotyping rate in remaining individuals is 1
0 SNPs failed missingness test ( GENO > 1 )
0 SNPs failed frequency test ( MAF < 0 )
After frequency and genotyping pruning, there are 500 SNPs
After filtering, 0 cases, 0 controls and 120 missing
After filtering, 0 males, 120 females, and 0 of unspecified sex
Writing transposed ped file to [ plink.tped ] 
Writing family information to [ plink.tfam ] 

Analysis finished: Wed May  9 16:35:09 2012